Initially I thought today was not going to be such a productive day. However, I have now managed to set up an online web server http://edcannon.hobby-site.com/CDKDescriptorCalculation.html) that can calculate descriptors from the Chemistry Development Kit given a smile string as input. The descriptors that have been implemented at present are:
- BCUT
- Fingerprint
- Apol
- Number of aromatic atoms
- Autocorrelation descriptor with polarisability
- Number of hydrogen bond acceptors
- Number of hydrogen bond donors
- Lipinski's rule of 5
- Total polar surface area
- XlogP
More descriptors will be made available later. I also intend to put an online service for machine learning algorithms in using the Open Source WEKA Java library.
Off to bed.
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